How in JupyterLab run a given Python instruction before each cell?
Feb 22, 11:46pm

In JupyterLab, you can run a specific Python instruction (or a set of instructions) before each cell execution using startup scripts or cell magic commands. Here are the most common and effective methods:


1. Using %run Magic Command

You can use the %run magic command at the top of your notebook to execute a script before running any cell. However, this only runs once at the start, not before each cell.


2. Using %%capture and %automagic (Not Recommended for This Use Case)

These are not directly useful for running code before each cell, but are mentioned for completeness.


3. Using IPython Startup Files

You can create a startup script that runs every time a Jupyter kernel starts. This is useful for imports or configurations, but not for running code before each cell.

  1. Create a file (e.g., startup.py) in the IPython profile startup directory:

    python
    # Find your profile directory:
    !jupyter --paths

    Place your script in the startup folder of your profile directory.

  2. Add your code to startup.py. This will run when the kernel starts, not before each cell.


4. Using a Custom IPython Extension

You can write a custom IPython extension to run code before each cell execution. This is more advanced but gives you full control.

Example:

  1. Create a file my_extension.py:
    python
    def load_ipython_extension(ipython):
        def pre_run_cell(info):
            print("Running before each cell!")
            # Add your code here
        ipython.events.register('pre_run_cell', pre_run_cell)
  2. Install the extension:
    bash
    ipython register my_extension.py
  3. Load the extension in your notebook:
    python
    %load_ext my_extension

5. Using %autorun (Not Native, Requires Custom Setup)

There is no native %autorun magic, but you can simulate this behavior with a custom solution.


6. Using a Notebook Initialization Cell

  • Create a cell at the top of your notebook with the code you want to run before each cell.
  • Use the %%capture magic to suppress output if needed.
  • Manually re-run this cell before each new cell, or use a notebook extension to automate this.

7. Using Jupyter Notebook Extensions

There are third-party extensions (like jupyter-contrib-nbextensions) that allow you to run a cell automatically before others, but this is not built into JupyterLab by default.


Best Practical Solution

If you want to run a specific instruction before each cell, the most practical approach is to:

  • Use a function: Define a function with your setup code and call it at the start of each cell.
  • Use a notebook template: Start each notebook with a setup cell and run it first.

Example:

python
def setup():
    print("Running setup code!")
    # Your setup code here

setup()  # Call this at the start of each cell

Feb 22, 11:46pm

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